PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 239aa    MW: 26213 Da    PI: 6.1493
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06533634
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                    C+ ++++e++ fC  ++  lC+ C  + H
  XP_013587967.1  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
                    *************************9988 PP

2zf-B_box28.43.4e-095592338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  XP_013587967.1 55 APLCDICGERRALLFCQKDRAILCRECDIPIHQAneHT 92
                    789*****************************767876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000213.24E-6533No hitNo description
PROSITE profilePS501199.99753100IPR000315B-box-type zinc finger
SMARTSM003362.5E-1553100IPR000315B-box-type zinc finger
PfamPF006431.7E-75593IPR000315B-box-type zinc finger
CDDcd000214.52E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TPKDAPLCDI  60
CGERRALLFC QKDRAILCRE CDIPIHQANE HTKKHNRFLL TGIKLSASPS AYPRASNSGA  120
TLGQAKTRPK SVSGEVPSSA SSEVFASSPS TTTSNYYYGL EETYQQASDS GSGSGSGSIS  180
EYLMETLPGW RVEDLLEDPS CVSYEDNNNI FTKNNNKGVN DGSSSQYQHQ GFWEQKPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895210.0AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587967.10.0PREDICTED: B-box zinc finger protein 20-like
RefseqXP_013669315.10.0PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-132BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A0D3A0V60.0A0A0D3A0V6_BRAOL; Uncharacterized protein
STRINGBra011879.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-113DBB family protein